HsaEX1019173 @ hg38
Exon Skipping
Gene
ENSG00000147121 | KRBOX4
Description
KRAB box domain containing 4 [Source:HGNC Symbol;Acc:HGNC:26007]
Coordinates
chrX:46471142-46474639:+
Coord C1 exon
chrX:46471142-46471185
Coord A exon
chrX:46472025-46472143
Coord C2 exon
chrX:46472750-46474639
Length
119 bp
Sequences
Splice sites
3' ss Seq
TACTGTGAACTCCTTTTCAGTGA
3' ss Score
6.33
5' ss Seq
TAGGTGAAT
5' ss Score
3.81
Exon sequences
Seq C1 exon
ATGTATCCATTTTTGCCTCATGTATTTTGAAGTGCTGTTATTAG
Seq A exon
TGAGAGTTATTTTCCATGGAAATTCTGTGTACCCTAAGCTATGAAAGCATCACTGCAGAACTATTTGGATTGCCACTGCTGGGGCCCACTGGTTTCACTAATGCAGGAACAATTTATAG
Seq C2 exon
AAGTCTGGCAAGTTGATGAGCAGATAGATCACTACAAGGAAAGCCAAGACAAACTTCCTTGGCAAGCTGCATTCATAGGCAAGGAAACACTGAAGGATGAAAGCGGTCAAGAATCCAGAACATGTAGAAAAAGCATTTATCTGAGCACAGAATTTGATTCTGTAAGGCAAAGACTCCCTAAATATTATTCGTGGGAAAAGGCATTCAAAACATCATTTAAACTTTCTTGGTCAAAATGGAAGCTATGTAAGAAAGAAAGATGATGGATGTAAAGCATATTGGAAAGTATGCTTCCATTATAATCTTCATAAAGCTCAACCTGCAGAGAGATTTTTTGACCCTAATCAACGAGGGAAAGCCCTCCACCAAAAGCAAGCCCTTAGAAAAAGTCAGAGAAGTCAAACTGGGGAGAAACTCTACAAATGTACTGAATGTGGAAAAGTGTTTATCCAGAAAGCAAACTTAGTTGTACATCAAAGAACTCACACCGGAGAGAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147121-'23-19,'23-18,24-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCATGTATTTTGAAGTGCTG
R:
TGTTTTGAATGCCTTTTCCCACG
Band lengths:
243-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains