HsaEX1019366 @ hg38
Exon Skipping
Gene
ENSG00000135862 | LAMC1
Description
laminin subunit gamma 1 [Source:HGNC Symbol;Acc:HGNC:6492]
Coordinates
chr1:183130344-183131378:+
Coord C1 exon
chr1:183130344-183130549
Coord A exon
chr1:183130829-183131191
Coord C2 exon
chr1:183131299-183131378
Length
363 bp
Sequences
Splice sites
3' ss Seq
TTATCCTTTACTGAAAATAGAAT
3' ss Score
2.84
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
ATGTTGACCAGAATTTGATGGATCGCCTACAGAGAGTGAATAACACTCTGTCCAGCCAAATTAGCCGTTTACAGAATATCCGGAATACCATTGAAGAGACTGGAAACTTGGCTGAACAAGCGCGTGCCCATGTAGAGAACACAGAGCGGTTGATTGAAATCGCATCCAGAGAACTTGAGAAAGCAAAAGTCGCTGCTGCCAATGTG
Seq A exon
AATCTGCAATCAAGGGTGCTGATATTAAATAAAGATCTCTGAAAATAAGAAGAGGTATTCTTGGGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAGGTCGAGAGTTCGAGACCAGCTTGACCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGCCGGGTATGGTGGTGCATGCCTGTAATCCCGGCTACTTGGGAGGCTAAGGCAGGAGAACCACTTGAACCCAGGAAGCAGAGGTTGCGGTGAACTGAAATTGTGCCATTGCCCTTCTGCCTGGGCAACAAGAGTGAAACTATCTCAAAAAAAAAAAAAAAAAAG
Seq C2 exon
TCAGTCACTCAGCCAGAATCTACAGGGGACCCAAACAACATGACTCTTTTGGCAGAAGAGGCTCGAAAGCTTGCTGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135862-'42-42,'42-41,43-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=0.000 C2=0.963
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000258341fB18640
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGACCAGAATTTGATGGATCG
R:
CGTTCAGCAAGCTTTCGAGC
Band lengths:
286-649
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains