HsaEX1019498 @ hg38
Exon Skipping
Gene
ENSG00000214402 | LCNL1
Description
lipocalin like 1 [Source:HGNC Symbol;Acc:HGNC:34436]
Coordinates
chr9:136984490-136985137:+
Coord C1 exon
chr9:136984490-136984563
Coord A exon
chr9:136984713-136984823
Coord C2 exon
chr9:136985036-136985137
Length
111 bp
Sequences
Splice sites
3' ss Seq
AGCGGCTCTCGCTCCTCCAGCCA
3' ss Score
7.53
5' ss Seq
ACGGTGGGC
5' ss Score
6.83
Exon sequences
Seq C1 exon
GCCCCATGGCGGGTGCCAGAAAATGGACACGACCTTCACCGAGGGTGCTGTACCGGGGCAGTTCAGCAACCCAG
Seq A exon
CCATGGCCCTGAGTGACATCCGAGTGGCCTTCTCCGACTACCAGCACTTTGCCTTGCTGTACTTGGAGATGCGGAAAGGGGGCCTGCGGAACCAGTGGCTGCAGCTCTACG
Seq C2 exon
CTCGAGCGCCCGAGCTGTTTCCCGAAGGCGCCCAGAAGATGCAGCTACTGGCGCCCCAAGTGGGCCTGAGCCCCAGCCAGGGCGTCCTGCTGCCGAAGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214402_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.020 C2=NA
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(22.7=100)
A:
PF0006118=Lipocalin=PD(40.0=44.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGACACGACCTTCACCG
R:
CGACTTCGGCAGCAGGAC
Band lengths:
155-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains