HsaEX1019632 @ hg38
Exon Skipping
Gene
ENSG00000121454 | LHX4
Description
LIM homeobox 4 [Source:HGNC Symbol;Acc:HGNC:21734]
Coordinates
chr1:180248285-180266594:+
Coord C1 exon
chr1:180248285-180248456
Coord A exon
chr1:180266203-180266253
Coord C2 exon
chr1:180266392-180266594
Length
51 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTTTGGTGGTTGAAGAGT
3' ss Score
2.81
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
AGATTCCCCAGTGCGCTGGCTGCAACCAGCACATCCTGGACAAGTTCATCCTGAAGGTCCTGGACAGACACTGGCACAGCTCCTGCCTCAAGTGTGCAGACTGCCAGATGCAGCTGGCGGACAGGTGCTTCTCCAGGGCTGGGAGCGTCTACTGCAAGGAGGACTTCTTCAA
Seq A exon
AGTCCCAGGCACAAAGCAATGAAGCTAGATGGAGGCAGAGAGGACCAGACG
Seq C2 exon
GCGCTTCGGCACAAAATGCACGGCCTGCCAGCAGGGTATCCCCCCAACCCAGGTGGTCCGCAAGGCCCAGGACTTTGTCTACCACCTGCACTGCTTTGCTTGCATCATCTGCAACCGGCAGCTGGCCACGGGGGACGAATTCTACCTCATGGAGGACGGGCGGCTGGTGTGCAAGGAAGACTACGAGACAGCCAAGCAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121454_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.324
Domain overlap (PFAM):
C1:
PF0041217=LIM=PU(94.6=91.4)
A:
PF0041217=LIM=PD(3.6=25.0)
C2:
PF0041217=LIM=PD(3.6=2.9),PF0041217=LIM=WD(100=87.0)
Main Inclusion Isoform:
ENST00000263726fB18799
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGTCTACTGCAAGGAGGA
R:
ATGATGCAAGCAAAGCAGTGC
Band lengths:
138-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains