HsaEX1021696 @ hg38
Exon Skipping
Gene
ENSG00000242268 | LINC02082
Description
long intergenic non-protein coding RNA 2082 [Source:HGNC Symbol;Acc:HGNC:52931]
Coordinates
chr3:168902383-168908413:+
Coord C1 exon
chr3:168902383-168902525
Coord A exon
chr3:168903168-168903540
Coord C2 exon
chr3:168908287-168908413
Length
373 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTCCCTCAATAAAGATC
3' ss Score
6
5' ss Seq
CCAGTAAGC
5' ss Score
5.34
Exon sequences
Seq C1 exon
TCATCCAGGATTGACTGCTCCTTCTTCACAAGGGTCTCTGCAGGTCCCAGTATACCAAACACACAGTATTAATCAATATTCATGGAGTGAATGAAAAAAATGAATGAATGAAAGTGATATATTTGCTACCTTACAGATAACAT
Seq A exon
ATCTACTTTAGGCCGGACGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGAAGATTGAGGTGGGCAGATCATGAGGTCAAGAGATCGAGACCAACCTGGCCAATATGGTGAAACCTCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTATTCTGGAGGCTGAGGCAGGAGAATTGCTTGAACCCTGGAGGCGGAGGTTGCCGTGAGCTAACATTGCGCCCCTACACTCCAGCCTGCCAACAGAGCAAGACTCCGTCTCAAAAATAAAAAAAGGATCTACTTTTGAGAATACTGTCATTGGTTGATAAAATACAGCAGAAACTTGTGAAGAAGCTATTTTCCA
Seq C2 exon
TATTCACCTGGCATGTTTGGAGATGATTGCCATCAACTTTGTGACTGTGAAGGAGAAACCTTCTGCCACCCAAAAACTGAAAAATGCCTCTGCCCCCGTGGGAGAACTGGAGCCAGATGTGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000242268_MULTIEX1-2/2=1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCAGGATTGACTGCTCCT
R:
CAGCATCACATCTGGCTCCAG
Band lengths:
270-643
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains