HsaEX1021942 @ hg38
Exon Skipping
Gene
ENSG00000135363 | LMO2
Description
LIM domain only 2 [Source:HGNC Symbol;Acc:HGNC:6642]
Coordinates
chr11:33881824-33891190:-
Coord C1 exon
chr11:33891090-33891190
Coord A exon
chr11:33882184-33882276
Coord C2 exon
chr11:33881824-33881887
Length
93 bp
Sequences
Splice sites
3' ss Seq
CAGAACACTTGCTTTCTCAGACC
3' ss Score
5.72
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TTGAAAAACCAAGGCGGATGAGGAAAGTGGCTACAAGTTCCTTCCATCACAGAGGATCAATGAAGGGGAACAAAGATTTGGGAGCATCTACTTTGTGCCAG
Seq A exon
ACCGGCAGGTGCATACAATGGCAAGGCCACCTGATACACCAGTCCTGTTCATTTGGAAAAGGGACAACTCCTTCACATTCACAAGCTGGGCTG
Seq C2 exon
TAACAACTGCTCTGAAAAGAAGATATTTTTCAACCTGAACTTGCAGTAGCTAGTGGAGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135363-'3-2,'3-1,4-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCAAGGCGGATGAGGAAA
R:
TGCCTCTCCACTAGCTACTGC
Band lengths:
159-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains