HsaEX1022949 @ hg38
Exon Skipping
Gene
ENSG00000173838 | MARCH10
Description
membrane associated ring-CH-type finger 10 [Source:HGNC Symbol;Acc:HGNC:26655]
Coordinates
chr17:62788480-62801752:-
Coord C1 exon
chr17:62801646-62801752
Coord A exon
chr17:62795020-62795059
Coord C2 exon
chr17:62788480-62788599
Length
40 bp
Sequences
Splice sites
3' ss Seq
ATCAACTTTTCTTCCCATAGGGA
3' ss Score
10.61
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GTCAGGGATTAGGAATCATGTTGCATGACGCAAGGGACAGGCAGAAGTTCTTCAGCGATGTTCAGTATCTGCGGGACATGCAGCATAAGGTGGACTCTGAGTATCAG
Seq A exon
GGACGGAGGTGAGGGATTCTCCTCCTGGCTCACCTTTGAG
Seq C2 exon
GCTTGTCTGAGACGACAGGAATATAGAAGAGACCCAAATGAGAAGAAACGCGATCAGTTTTGGGGGCAAGAGACAAGTTTTGAGAGATCCCGGTTTTCTAGCAGGTCATCTTCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173838_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=1.000 C2=0.739
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000583600fB19523
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCAGAAGTTCTTCAGCG
R:
TCTTGCCCCCAAAACTGATCG
Band lengths:
142-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains