HsaEX1023171 @ hg38
Exon Skipping
Gene
ENSG00000249898 | MCPH1-AS1
Description
MCPH1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:51655]
Coordinates
chr8:6627151-6635419:-
Coord C1 exon
chr8:6634595-6635419
Coord A exon
chr8:6629337-6629434
Coord C2 exon
chr8:6627151-6627310
Length
98 bp
Sequences
Splice sites
3' ss Seq
GGTTTTGCTCTGTTGCACAGGTT
3' ss Score
6.45
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
TTGACAAGCTGAATTCTTCTAAACCACCACCTGGTTCATCATCATCACTGAACACAGTCGTAGGCCAGAGGTCACGCCAGGCACGCACATCTGTGTCTTTAGTCACTGTGTTGCAAGCGTTGGCAACAGCATGTATGGCATCCTTCATGCTCAGCTCCTGAAAATCTTCTACACCTACACCTCCGTTCACTGCTGCGAGCGTGCAATTCAAGACAGTGTTTTTATATTTACTTTTCATTGATCTAAAGATACCCTGGTTACAGGCTCAACTAATGAAGTCACGTTTGGGGGAAAGTACACAGCATCAATATTATCTTTGATGAGAATTTCAGCTGGAGGATGAGCAGAACAGTAGTCAAGGCATAAGAAAATCTTGCTGTCATCATCCGGTCCAACTTTTCTGCAGCGAGCACAAGAGGCCTGTACGAAGTGTTTGTAAAACCGATCAGAAAAGATGTCCCTGGTGATCTATGCCTTTTTGTTAGCATAATAATGGACTG
Seq A exon
GTTGGAGTGCAGTGGTGGGATCACGACTAACTGCAGCCTCCGCCTCTTGTGTTCAAGGGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTGCAG
Seq C2 exon
CTTCTGCAGATGGCCTCCCCTCTCTGCGACTGGTTCCTTATCGAGGCAATGGAGATGTGGACTGCGGTGACTGATCAAGCCTCACATATCTACTGAATCAGGAAGCCCGAAGGCCTGAGGCCTCCCGAGTGGCCCCATGGGAGCGTCGTGCATTTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249898_MULTIEX1-4/4=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGTCCAACTTTTCTGCAG
R:
GTCCACATCTCCATTGCCTCG
Band lengths:
177-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains