HsaEX1023918 @ hg38
Exon Skipping
Gene
ENSG00000078403 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr10:21524675-21538912:+
Coord C1 exon
chr10:21524675-21524775
Coord A exon
chr10:21534449-21534520
Coord C2 exon
chr10:21538833-21538912
Length
72 bp
Sequences
Splice sites
3' ss Seq
GAGGAGGCGGTGGAGGGGAGGTG
3' ss Score
-13.87
5' ss Seq
CGAGTGAGC
5' ss Score
5.16
Exon sequences
Seq C1 exon
TGGAATACAAACTCTCCCGACATCCGTAGTTACTTTCAAGGTGGATTGTGTATTTTAAGGCTGATGGGAACGTCTGGTTTGTGGAGCAAAAAGAAGAGAAG
Seq A exon
GTGGGGGGAATCAGCAAGGACATGGCTCCTGACTCCTGTGCGGAACGTGAGTGACTGAGCGGCAAAGCCCGA
Seq C2 exon
CTTGCTATGGCATTGTTCAAGTACCCACTGGACCGTGGTTTTGCAGGAAATGTGAATCTCAGGAGAGAGCAGCCAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078403_MULTIEX1-1/11=C1-3
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138311=PHD_2=PD(48.6=66.7),PF138321=zf-HC5HC2H_2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENST00000307729fB20013
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACTCTCCCGACATCCGT
R:
CTGGCTGCTCTCTCCTGAGAT
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains