HsaEX1024583 @ hg38
Exon Skipping
Gene
ENSG00000205592 | MUC19
Description
mucin 19, oligomeric [Source:HGNC Symbol;Acc:HGNC:14362]
Coordinates
chr12:40549896-40550535:+
Coord C1 exon
chr12:40549896-40549949
Coord A exon
chr12:40550105-40550158
Coord C2 exon
chr12:40550482-40550535
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTCCCTTCACTTAGAAG
3' ss Score
7.53
5' ss Seq
TAGGTGGGC
5' ss Score
5.26
Exon sequences
Seq C1 exon
GCACCACTGGCATAGTCTCTGGCACAACAGTTGCACCTGGAAGTTCCAACACAG
Seq A exon
AAGCCACAACTTCTTTGGGCAATGGTGGAACCACTGAGGCTGGAAGTAAAATAG
Seq C2 exon
TTACCACTGGGATAACTACTGGCACGACCATTGTACCTGGGAGTTTCAACACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205592_CASSETTE11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCACTGGCATAGTCTCTG
R:
TTGTGTTGAAACTCCCAGGTACA
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains