HsaEX1024588 @ hg38
Exon Skipping
Gene
ENSG00000205592 | MUC19
Description
mucin 19, oligomeric [Source:HGNC Symbol;Acc:HGNC:14362]
Coordinates
chr12:40535204-40535959:+
Coord C1 exon
chr12:40535204-40535257
Coord A exon
chr12:40535765-40535809
Coord C2 exon
chr12:40535906-40535959
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACAATCCTCTCTTATTTCAGGTA
3' ss Score
10.8
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
AGGCCACGACTTCTTTAGGAGAAAGTGGAAAAACAAGAGTTGAAACAATCACAG
Seq A exon
GTACTACTGAGGGTAAAACTCTGGCAGCTGGAAGTGCCCACACAG
Seq C2 exon
AGGCCACAACTTTCTCAGGAGGCAGCGGGAGCACCCGAGCAGGACCACTGGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205592_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCACGACTTCTTTAGGAGA
R:
CACCCAGTGGTCCTGCTCG
Band lengths:
108-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains