HsaEX1024589 @ hg38
Exon Skipping
Gene
ENSG00000205592 | MUC19
Description
mucin 19, oligomeric [Source:HGNC Symbol;Acc:HGNC:14362]
Coordinates
chr12:40544639-40545097:+
Coord C1 exon
chr12:40544639-40544692
Coord A exon
chr12:40544830-40544883
Coord C2 exon
chr12:40545050-40545097
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCCCTTTTTCTCAGAGG
3' ss Score
9.67
5' ss Seq
ATGGGAAGT
5' ss Score
3.37
Exon sequences
Seq C1 exon
GCACAGCTAAAGTGCTCTCTGGTACGACAGTTGCCTCTGGGAGCTCCAACTCAG
Seq A exon
AGGCTACAACTTTCTCTGGAATCACTGAAGCAGTAACAGTCCCAAGTAAAAATG
Seq C2 exon
GATCTATGACCACTGCACTGGGGAGCCAACTCTCCAGCAGTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205592_CASSETTE8
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCTAAAGTGCTCTCTGGT
R:
TGTTTGACTGCTGGAGAGTTGG
Band lengths:
100-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains