HsaEX1024710 @ hg38
Exon Skipping
Gene
ENSG00000133026 | MYH10
Description
myosin heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:7568]
Coordinates
chr17:8484138-8487594:-
Coord C1 exon
chr17:8487433-8487594
Coord A exon
chr17:8486948-8487071
Coord C2 exon
chr17:8484138-8484266
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCGTCACTTTTTCTACCCAGATG
3' ss Score
7.53
5' ss Seq
CTGGTCCGT
5' ss Score
3.26
Exon sequences
Seq C1 exon
GTGCGGGAGCTCGAGGCGGAGCTGGAGGATGAGAGGAAACAGCGGGCGCTTGCTGTAGCTTCAAAGAAAAAGATGGAGATAGACCTGAAGGACCTCGAAGCCCAAATCGAGGCTGCGAACAAAGCTCGGGATGAGGTGATTAAGCAGCTCCGCAAGCTCCAG
Seq A exon
ATGATGTGCCAGTTTTCATTACCACAATGACAAGAAGTGATCTCTGCAAGAGTTCATGGTGTGAGCAGGCAGGCAGGGGGCCCTCACCTATAGGATGGATGGGAGCAACTTCTCAGGGGAACTG
Seq C2 exon
GCTCAGATGAAGGATTACCAACGTGAATTAGAAGAAGCTCGTGCATCCAGAGATGAGATTTTTGCTCAATCCAAAGAGAGTGAAAAGAAATTGAAGAGTCTGGAAGCAGAAATCCTTCAATTGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.256
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.2=100)
A:
PF0157614=Myosin_tail_1=PD(0.7=40.0)
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Inclusion Isoform:
ENST00000360416fB20481
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTTGCTGTAGCTTCAAAG
R:
TCCTGCAATTGAAGGATTTCTGCT
Band lengths:
245-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains