HsaEX1024740 @ hg38
Exon Skipping
Gene
ENSG00000078814 | MYH7B
Description
myosin heavy chain 7B [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr20:34993334-34994401:+
Coord C1 exon
chr20:34993334-34993470
Coord A exon
chr20:34993673-34993746
Coord C2 exon
chr20:34994146-34994401
Length
74 bp
Sequences
Splice sites
3' ss Seq
CACTTGCCTCTCCATTTCAGGAC
3' ss Score
10.61
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
Exon sequences
Seq C1 exon
GTGTTCTTCAAGGCTGGGCTTCTAGGCGTCCTGGAAGAGCTCCGTGACCAGCGCCTGGCCAAGGTGCTGACGCTGCTGCAGGCGCGGAGCCGTGGCCGCCTCATGCGCCTTGAGTACCAGCGCCTGCTGGGAGGCAG
Seq A exon
GACATCAGCGTGTGGCCCGGAGGGGTAGCGATGGCACCCAGTGTCTTCCAAGACTCTTGCGGGCCGGGCCCCAG
Seq C2 exon
GGATGCGCTGTTCACCATCCAGTGGAACATCCGTGCCTTCAATGCCGTCAAGAACTGGTCATGGATGAAGCTCTTTTTCAAGATGAAGCCGCTGCTGCGCTCGGCGCAGGCTGAGGAGGAGCTGGCGGCCCTGCGGGCAGAGCTGCGGGGGTTGCGAGGGGCGCTGGCTGCGGCCGAGGCCAAGCGCCAGGAACTGGAGGAGACGCACGTCAGCATCACCCAGGAGAAGAATGACCTGGCCCTGCAGCTGCAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.035
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NO
C2:
PF0157614=Myosin_tail_1=PU(24.3=62.8)
Main Inclusion Isoform:
ENST00000262873fB20494
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCTTCAAGGCTGGGCTT
R:
TTGAAGGCACGGATGTTCCAC
Band lengths:
179-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains