HsaEX1024782 @ hg38
Exon Skipping
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr5:16711121-16754908:-
Coord C1 exon
chr5:16754828-16754908
Coord A exon
chr5:16741804-16741883
Coord C2 exon
chr5:16711121-16711245
Length
80 bp
Sequences
Splice sites
3' ss Seq
CCCATTTTTGTGTCTGTCAGCTT
3' ss Score
7.86
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GACTCACTGCATTCCTTAATGGCAACGCTAAGCTCCTCTAATCCTTTCTTTGTTCGCTGTATCAAGCCAAACATGCAGAAG
Seq A exon
CTTAGATGCCCTTGCCCGGACTGCTAAAGATGCAGCTATTTACAGTGGACAGAAACTGAAGGGGTGAAAGAAAACCCAAG
Seq C2 exon
ATGCCAGACCAGTTTGACCAGGCGGTTGTGCTGAACCAGCTGCGGTACTCAGGGATGCTGGAGACTGTGAGAATCCGCAAAGCTGGGTATGCGGTCCGAAGACCCTTTCAGGACTTTTACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555_MULTIEX1-2/3=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.9=100)
A:
PF0006316=Myosin_head=PD(0.7=44.4)
C2:
PF0006316=Myosin_head=PU(34.8=95.8)
Main Inclusion Isoform:
ENST00000513610fB20522
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGCAACGCTAAGCTCCTC
R:
AGTCCTGAAAGGGTCTTCGGA
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains