HsaEX1024799 @ hg38
Exon Skipping
Gene
ENSG00000041515 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr13:109046916-109052475:+
Coord C1 exon
chr13:109046916-109046991
Coord A exon
chr13:109051823-109051883
Coord C2 exon
chr13:109052300-109052475
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCTTCTTTCACCTAGCAA
3' ss Score
6.99
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTAATGTATGATGTTGTTGGGGCGATTGAAAAAAATAAAGACTCCCTTTCACAGAATCTTCTATTTGTAATGAAAA
Seq A exon
CAACTGGTGCACCAAGTAAGGCAGGTCCTCTCACAGGTACTTACAGACGGCTCTGAGACAG
Seq C2 exon
CTAGTGAAAATGTCGTGATCAATCATTTGTTCCAGTCGAAATTGTCACAAACAGGATCCCTCGTATCTGCCTATCCTTCCTTTAAATTCCGAGGACATAAGTCTGCCCTGCTCAGTAAGAAAATGACAGCTTCTTCAATTATTGGAGAAAACAAGAATTATCTAGAACTTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041515-'51-59,'51-58,53-59
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
PF0006316=Myosin_head=PD(1.7=47.4)
C2:
PF0006316=Myosin_head=FE(7.9=100)
Main Inclusion Isoform:
ENST00000356711fB20528
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTTGTTGGGGCGATTGA
R:
GGCAGATACGAGGGATCCTGT
Band lengths:
139-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains