HsaEX1024856 @ hg38
Exon Skipping
Gene
ENSG00000071909 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr2:170369222-170382112:+
Coord C1 exon
chr2:170369222-170369377
Coord A exon
chr2:170371573-170371716
Coord C2 exon
chr2:170382016-170382112
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTACTATTACTTCCTCTTAGCAA
3' ss Score
4.83
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTGTCTTATTAAGGATTTTGAAAGGCGACCTTCCGTCACACATCTCCTTGACCACCCATTTATTAAAGGAGTACATGGAAAAGTTCTGTTTCTGCAAAAACAGCTGGCCAAGGTTCTCCAAGACCAGAAGCATCAAAATCCTGTTGCTAAAACCAG
Seq A exon
CAACTGGCAAGGAGCTGGCTACATAGATGTTTTTCAGCCCACCAGGAAAAACTCTCAAATATCATTCCATGCTGATAAATCAATATATTTAAAGCTGTGGTTTTTCAAGTTAAAGCAGAAAAAAAAAAAAACAGAAAAATTGAG
Seq C2 exon
GCATGAGAGGATGCATACCAGAAGACCTTATCATGTGGAAGATGCTGAAAAATACTGCCTTGAGGATGATTTGGTCAACCTAGAGGTTCTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071909-'21-23,'21-22,22-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=0.061 C2=0.269
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(7.9=39.6)
A:
NO
C2:
PF0006316=Myosin_head=PU(1.6=33.3)
Main Inclusion Isoform:
ENST00000408978fB20567
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTTATTAAGGATTTTGAAAGGC
R:
CCTCTAGGTTGACCAAATCATCC
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains