HsaEX1024859 @ hg38
Exon Skipping
Gene
ENSG00000071909 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr2:170463368-170466711:+
Coord C1 exon
chr2:170463368-170463445
Coord A exon
chr2:170464892-170465009
Coord C2 exon
chr2:170466506-170466711
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTTTTAAGACAGAGT
3' ss Score
1.99
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGGACACTCTGGAGGTGATACGGCATCCGGAAGAAACCACCAACATGAAGAGGCAAACTGTGGCTTCTTACTTCCGG
Seq A exon
AGTCTGGCTCTGTCACCCAGGCTGGAGTTCAGTGGTGCCATCTAGGTTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCGTCAGCCTCCCACGTAGCTGGGACTACAG
Seq C2 exon
TATTCTCTGATGGACCTGCTCTCCAAAATGGTGGTTGGACAGCCCCACTTTGTGCGCTGCATTAAACCCAATGATGACCGAGAGGCCCTGCAGTTCTCTCGAGAGAGGGTGCTGGCCCAGCTCCGCTCCACAGGGATTCTGGAGACAGTCAGCATCCGCCGCCAGGGCTATTCCCACCGCATCCTTTTTGAAGAATTTGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071909-'53-52,'53-51,54-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
PF0006316=Myosin_head=PD(0.7=26.7)
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Inclusion Isoform:
ENST00000408978fB20569
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCGGAAGAAACCACCAA
R:
AAAGGATGCGGTGGGAATAGC
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains