HsaEX1024862 @ hg38
Exon Skipping
Gene
ENSG00000071909 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr2:170392381-170400314:+
Coord C1 exon
chr2:170392381-170392495
Coord A exon
chr2:170393760-170393827
Coord C2 exon
chr2:170400188-170400314
Length
68 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTTTCTGTCTAGCCA
3' ss Score
8.41
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTACATAGCTGATGAAACTGGAAGGGTGATGCACGACATAACTTCCAAGGAGTCTTACAGAAGACAATTCGAAGCAATTCAGCATTGCTTCAGGATTATAGGGTTCACGGACAAA
Seq A exon
CCAGCTGTTAATTTTCTCTGTCAGCCTCCCGCAGACTTTAAACTGACAGACAATGGAAAATCCCAAAG
Seq C2 exon
GAGGTGCACTCAGTGTACAGAATTTTGGCTGGGATTTTGAATATTGGGAACATTGAGTTCGCAGCTATTTCCTCTCAACATCAGACTGATAAAAGTGAGGTGCCCAATGCTGAAGCTTTGCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071909_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.135
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(14.7=100)
A:
PF0006316=Myosin_head=PD(1.9=21.7)
C2:
PF0006316=Myosin_head=FE(6.0=100)
Main Inclusion Isoform:
ENST00000408978fB20572
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGGAAGGGTGATGCACG
R:
TGTTGAGAGGAAATAGCTGCGA
Band lengths:
181-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains