HsaEX1024875 @ hg38
Exon Skipping
Gene
ENSG00000197535 | MYO5A
Description
myosin VA [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr15:52351254-52353658:-
Coord C1 exon
chr15:52353605-52353658
Coord A exon
chr15:52351596-52351927
Coord C2 exon
chr15:52351254-52351481
Length
332 bp
Sequences
Splice sites
3' ss Seq
TTCCATTCTGCTTTATAAAGGAA
3' ss Score
5.57
5' ss Seq
AGGGTAACT
5' ss Score
5.8
Exon sequences
Seq C1 exon
GAAGAAGAAAGACCACAAATTAGAGGTGCAGAACTGGAATATGAGTCACTCAAG
Seq A exon
GAAGTAAGAGGAGACTACTAAAGACTTCAGGGATCCACCCATCTGAATCATTCATTGGAAATATCCTGGCCAGCTGGACCCTCAGATTTCCCATATATTTATCTGCAAACAAAAGCTAGGCTCCATAGCACTGGCTAAACTCACCCCTTGGGACTCAGCAATCTCTCCATGCCAGTGAACACACCCTGGGCAGGCCAGAATACTACATTTGACTCTGGAATTTGGGCTGATGAAGCAAACTTCCATTGACCTTGCTCAATTCTACTTGATGTCAGACTTCCTTAATTTGCAAAGCAGGGCTCCTGGCAGAACCTAGGAAGCCATTCACTAGG
Seq C2 exon
CGTCAAGAACTAGAATCAGAAAACAAAAAACTGAAGAATGAGCTAAATGAGTTGCGCAAGGCCCTCAGTGAGAAAAGTGCCCCAGAGGTGACCGCCCCAGGTGCACCTGCCTACCGTGTCCTCATGGAGCAGCTGACCTCTGTGAGCGAGGAGCTTGATGTCCGCAAGGAGGAAGTCCTCATCTTAAGGTCTCAACTGGTGAGCCAGAAAGAGGCCATCCAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197535_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.981 A=0.000 C2=0.566
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000358212fB20582
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAAGACCACAAATTAGAGGTGCA
R:
CTTGGGTTGGATGGCCTCTTT
Band lengths:
278-610
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains