HsaEX1025932 @ hg38
Exon Skipping
Gene
ENSG00000163072 | NOSTRIN
Description
nitric oxide synthase trafficking [Source:HGNC Symbol;Acc:HGNC:20203]
Coordinates
chr2:168786539-168788048:+
Coord C1 exon
chr2:168786539-168786636
Coord A exon
chr2:168787048-168787116
Coord C2 exon
chr2:168787861-168788048
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCCAAATTCTTTCTTCTAAGGAG
3' ss Score
5.2
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCGCATGCAGCCCTTCCCAAGCACTGGTAGGGCACTGGGCATGCAGACAGCCCACCAGAAGGGAAGAATCAGGAGAAAAGGGATGCAAGATCCCAGAG
Seq A exon
GAGCTAAGAATTGAGTTCGCTGCGGACCCATAAGGATTCGCTGCTCGTAACAGCTGCTTCTGGGATCAG
Seq C2 exon
ATAAACTGAAGCACAAGAGGGTAAAAACTTTGTCCTTGGTCTTACAGCCAGAAAGTGGTGATGCAAAGAACTTAGTCCAAGCTTTGATCTGTTCTGCACTGCCTGCCAAAGCAGAACCTTGAGAAATACCCATGTTTGGGGGATGAGAAGAAGAAGATAAATCAGCAAAGAAAATAGTGATAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163072_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGGCATGCAGACAGC
R:
CAGGCAGTGCAGAACAGATCA
Band lengths:
171-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains