HsaEX1025943 @ hg38
Exon Skipping
Gene
ENSG00000134250 | NOTCH2
Description
notch 2 [Source:HGNC Symbol;Acc:HGNC:7882]
Coordinates
chr1:120029906-120069626:-
Coord C1 exon
chr1:120069334-120069626
Coord A exon
chr1:120051484-120051779
Coord C2 exon
chr1:120029906-120029987
Length
296 bp
Sequences
Splice sites
3' ss Seq
CTTAACAAACTTTCTTTCAGTTG
3' ss Score
6.79
5' ss Seq
GAGGTACAT
5' ss Score
6.75
Exon sequences
Seq C1 exon
AAACTTCGGGCGGCGGCTGAGGCGGCGGCCGAGGAGCGGCGGACTCGGGGCGCGGGGAGTCGAGGCATTTGCGCCTGGGCTTCGGAGCGTAGCGCCAGGGCCTGAGCCTTTGAAGCAGGAGGAGGGGAGGAGAGAGTGGGGCTCCTCTATCGGGACCCCCTCCCCATGTGGATCTGCCCAGGCGGCGGCGGCGGCGGCGGAGGAGGAGGCGACCGAGAAGATGCCCGCCCTGCGCCCCGCTCTGCTGTGGGCGCTGCTGGCGCTCTGGCTGTGCTGCGCGGCCCCCGCGCATG
Seq A exon
TTGTCCAGTGTACAGAAGCTTACTGGAAGGAGTGGCCAACTAGTTAAAGGTTTGACACCTCAATATCAACAAAATGCCAAGTGGATCATTTTGACTCTCACAGCAATCCAACTGGACATTTGACCATGCCCCGTGGTCAGTGGAGAGCTTCTTCTCTGAAGGCCACTTTTATCTAGCACATCAAGGCTATACACCTCTTTCACTAAGAAGAATTTGGCACTTTTATGTTGTGAGAGCTGAGATTCACCATTCTCCACCATCCTGAGAAGAGCTTTGATAGAAGGGCTACTCCTGAG
Seq C2 exon
CATTGCAGTGTCGAGATGGCTATGAACCCTGTGTAAATGAAGGAATGTGTGTTACCTACCACAATGGCACAGGATACTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134250_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGCGCCTGGGCTTCG
R:
TCCTGTGCCATTGTGGTAGGT
Band lengths:
301-597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains