HsaEX1026098 @ hg38
Exon Skipping
Gene
ENSG00000237187 | NR2F1-AS1
Description
NR2F1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:48622]
Coordinates
chr5:93554874-93563463:-
Coord C1 exon
chr5:93563419-93563463
Coord A exon
chr5:93555127-93555201
Coord C2 exon
chr5:93554874-93554995
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGAGTTATTTGTTCGGCTAGGCG
3' ss Score
4.65
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CAGGTAGATGAAACTCAAGAGAAAAGGTGTGGATAAATGAAACTA
Seq A exon
GCGTTGTAGAAATTGGAAACCAAAATGAAGAGGAACTTTAGGAGTTTGCAATCTAGTGGAAGACATCCAATTTTG
Seq C2 exon
GTGGCAGTGGGCCTGCATCACAGGTTGCAGCAGATGTTCTCAATATTTCTATTAAAATTTCCTTATTTCCATATGCAAGAGGAGCCCCAGAGCTGCATCCTTATGGTAGCTACCATGCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237187_MULTIEX2-2/13=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTAGATGAAACTCAAGAGAAAA
R:
CACGGCATGGTAGCTACC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains