HsaEX1026278 @ hg38
Exon Skipping
Gene
ENSG00000074527 | NTN4
Description
netrin 4 [Source:HGNC Symbol;Acc:HGNC:13658]
Coordinates
chr12:95728941-95738144:-
Coord C1 exon
chr12:95737866-95738144
Coord A exon
chr12:95731838-95731886
Coord C2 exon
chr12:95728941-95729041
Length
49 bp
Sequences
Splice sites
3' ss Seq
ATCATTATTTTCTTTCACAGATG
3' ss Score
10.64
5' ss Seq
AGGGTAGAG
5' ss Score
0.88
Exon sequences
Seq C1 exon
GTTATTTTCAAAGCTTTGTCACCACCATACGATACAGAGAACCCTTACAGTGCCAAAGTTCAGGAGCAGCTGAAGATCACCAACCTTCGCGTGCAGCTGCTGAAACGACAGTCTTGTCCCTGTCAGAGAAATGACCTGAACGAAGAGCCTCAACATTTTACACACTATGCAATCTATGATTTCATTGTCAAGGGCAGCTGCTTCTGCAATGGCCACGCTGATCAATGCATACCTGTTCATGGCTTCAGACCTGTCAAGGCCCCAGGAACATTCCACATG
Seq A exon
ATGCGAAACCGAGACTTGAAAATGTTGACTTCCCCAAAACGAACGAAGG
Seq C2 exon
GCTGTACAGGAAGCATGGCAGCATCTGCTTCTGGGGAGGCCTCAGGAAGCTTCCAATCATGGCGGAAGACAAAGCAGGAGCAAGACCCCTGACATGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074527-'20-19,'20-18,21-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=0.235 C2=NA
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(28.2=68.8),PF0005319=Laminin_EGF=PU(38.2=28.0)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENST00000344911fB21466
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCACGCTGATCAATGCATA
R:
TCCGCCATGATTGGAAGCTTC
Band lengths:
135-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains