HsaEX1026581 @ hg38
Exon Skipping
Gene
ENSG00000130558 | OLFM1
Description
olfactomedin 1 [Source:HGNC Symbol;Acc:HGNC:17187]
Coordinates
chr9:135090195-135096019:+
Coord C1 exon
chr9:135090195-135090344
Coord A exon
chr9:135094465-135094527
Coord C2 exon
chr9:135095864-135096019
Length
63 bp
Sequences
Splice sites
3' ss Seq
TACATCTTTTCTTGAAAAAGGTG
3' ss Score
5.09
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
GTGCTGCCCACCAACCCTGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGGACAGCGAGGGCAGGTGTATCTGCACAGTGGTCGCTCCACAGCAGACCATGTGTTCACGGGATGCCCGCACAAAACAGCTGAGGCAGCTACTGGAGAAG
Seq A exon
GTGCTGTAGTTATTCAAAGTGACAGAGGAAGACAACAAGAGAATCAGGCAGGTGGTATTAGAG
Seq C2 exon
GTGCAGAACATGTCTCAATCCATAGAGGTCTTGGACAGGCGGACCCAGAGAGACTTGCAGTACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCCAAGTTCAAACAGGTGGAGGAGAGTCATAAGCAACACCTGGCCAGGCAGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130558_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.201
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PU(46.5=94.0),PF0154011=Lipoprotein_7=PU(17.0=52.0),PF131661=AAA_13=PU(10.1=30.0)
A:
PF123083=Noelin-1=PD(2.0=33.3)
C2:
PF123083=Noelin-1=FE(50.5=100),PF0154011=Lipoprotein_7=FE(33.3=100),PF131661=AAA_13=FE(34.5=100),PF138741=Nup54=PU(41.4=92.3),PF045137=Baculo_PEP_C=PU(37.7=88.5)
Main Inclusion Isoform:
ENST00000252854fB21662
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTATCTGCACAGTGGTCG
R:
ACTGCAAGTCTCTCTGGGTCC
Band lengths:
147-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains