HsaEX1026632 @ hg38
Exon Skipping
Gene
ENSG00000160991 | ORAI2
Description
ORAI calcium release-activated calcium modulator 2 [Source:HGNC Symbol;Acc:HGNC:21667]
Coordinates
chr7:102438944-102454828:+
Coord C1 exon
chr7:102438944-102439181
Coord A exon
chr7:102446513-102447043
Coord C2 exon
chr7:102451420-102454828
Length
531 bp
Sequences
Splice sites
3' ss Seq
CTCGTCTGCTGTCCCCGCAGGTG
3' ss Score
12.74
5' ss Seq
CAGGTCTTG
5' ss Score
1.23
Exon sequences
Seq C1 exon
CCTGGCTCCCACCATGAGTGCTGAGCTTAACGTGCCTATCGACCCCTCTGCTCCTGCCTGCCCTGAGCCCGGCCATAAGGGCATGGATTACCGGGACTGGGTCCGCCGCAGCTACCTGGAACTGGTCACCTCTAACCACCACTCGGTACAGGCCCTGTCGTGGCGGAAGCTCTACCTGAGCAGGGCCAAGCTGAAGGCCTCCAGCAGGACCTCCGCCCTCCTCTCCGGCTTTGCCATG
Seq A exon
GTGGCCATGGTGGAGGTGCAGCTGGAGACGCAGTACCAGTACCCGCGGCCGCTGCTGATTGCCTTCAGCGCCTGCACCACGGTGCTGGTGGCCGTGCACCTGTTCGCCCTCCTCATCAGCACCTGCATCCTGCCCAATGTGGAGGCCGTGAGCAACATCCACAACCTGAACTCCATCAGCGAGTCCCCGCATGAGCGCATGCACCCCTACATCGAGCTGGCCTGGGGCTTCTCCACCGTGCTTGGCATCCTACTCTTCCTGGCCGAGGTGGTGCTGCTCTGCTGGATCAAGTTCCTCCCCGTGGATGCCCGGCGCCAGCCTGGCCCCCCACCTGGCCCTGGGAGTCACACGGGCTGGCAGGCCGCCCTGGTGTCCACCATCATCATGGTGCCCGTGGGCCTCATCTTCGTGGTCTTCACCATCCACTTCTACCGCTCCCTGGTGCGCCACAAAACGGAGCGCCACAACCGCGAGATCGAGGAGCTCCACAAGCTCAAGGTCCAGCTGGACGGGCATGAGCGCAGCCTGCAG
Seq C2 exon
GAAGGGTCTGCTGAGGACCAGACCACGTAAGCCTGAGTGGATCCTGACTCAGCTGCAGCCCTTACCTGCCTCGTGCTGATGATCTATGCATGGCGTTATGTAGATCACGTGCGGCAGAGACAGCCACTGTCCTGTGTGCGGGTTTTTAAAACAGCTGCCCTGGATGAAACGGAATAAACCAGTGATGCTATTCAAAGTCTTTCTGTTCTTGGGGGATGCTGTGGGCAGAGGGGATAAATTGCAGCCCCTGGCCCTCCCGTGGCATCTGCTGACTGGGGGACCCACATCGTGGCCTGAAAAACTCCTGGAGCGCCCTCTGGCCTCCTGTCGCTGGTCACTGGCCAGTGTCCTCCCAGGCTGCCCCGGCAAGGGGGCGTGGACATCTCTAGAATGGAGGCAGGGTACTCATGTCCAGACACGCCGCCATGGGGCTCCGCCCCGAGAGCGCAGGGTGCCTCTGCCTGGCGCTTCCCCTCCCAGACAGGGCCCTCTCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160991_MULTIEX1-2/3=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.053 C2=NA
Domain overlap (PFAM):
C1:
PF078567=Orai-1=PU(17.8=45.3)
A:
PF078567=Orai-1=PD(81.2=86.1)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTCTAACCACCACTCGG
R:
GCAATTTATCCCCTCTGCCCA
Band lengths:
355-886
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains