HsaEX1026730 @ hg38
Exon Skipping
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80261969-80265210:+
Coord C1 exon
chr12:80261969-80262093
Coord A exon
chr12:80264697-80264779
Coord C2 exon
chr12:80265001-80265210
Length
83 bp
Sequences
Splice sites
3' ss Seq
TACTCTCCAATTCTTTATAGTAG
3' ss Score
3.61
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
TTCTCCATCAGGCATGATAGAAGGTACACCACAACTTCACGCAAATGCGTGGAGAGTTTCTTCTACCTGTTTTGCACCTGTTCATGTCCCAGTGGTGGACCCCTGTAACATCAATCAACAAAACA
Seq A exon
TAGGTTTCCTAAGATGATCCTCATGCAATGGGATGGTTGAGGCCACTGCTTCTCTCAACCCTTCTATTACTCATGTTATTCAG
Seq C2 exon
TTGGGTATGCAGCACACTGTGATGTCATCCACCAGGAGCTCTTTGCTCCTTGCCACATCTATATTAGCCCTGGGCTGTACTATCAGCTATGCCGCCACGATGCATGCAAGTGTGGAAGCTCCTGCCTGTGCAATGCTCTTGCCCACTATGCCTACCTCTGCGGCCAGCACGGTGTTCCCATTGATTTCAGAACTCAGATTTCTTTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-'24-27,'24-26,25-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(3.3=11.6),PF087426=C8=PU(0.1=0.0)
A:
NO
C2:
PF087426=C8=WD(100=100.0)
Main Inclusion Isoform:
ENST00000458043fB21753
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCATGTCCCAGTGGTGG
R:
AGGAGCTTCCACACTTGCATG
Band lengths:
171-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains