HsaEX1026732 @ hg38
Exon Skipping
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80341948-80352436:+
Coord C1 exon
chr12:80341948-80342162
Coord A exon
chr12:80343564-80343857
Coord C2 exon
chr12:80352295-80352436
Length
294 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTGAATATTTTTGAGAGC
3' ss Score
-5.56
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GAATTTGCAATGAAGATCCGGATGATGATCTAAGGATGCAAAATGGCACAATTATTACAAATATGGAAGACATAGGATTATTTATTGAGAGCTGGGAAATTGAGAAATCATTTGAAGTAACAATGAGAAGACCTGTTAGGAATTGTACTGAGCATGATTGCAGCCAGTGCATTGATTTATTAAATAGAAGAATTTTCATTCCATGTCATGATAAA
Seq A exon
AGCTTCTTTGGAGGTTCTAGCAGGGGAGTGCTGCTACTCGTATACCCTTGACCAAAGGCCGGTCCTCTGTCGTGGATAGTCGTCCTTTCAACCAAATGTACACCTTCAGGAGGGACGTAAATGGAGCAATGAGGGAGGAAGGGACACTTGCTTAGCGAGCCAGATCAGCCGAATCAACCCTGGCCGTCAGTAGGATGACAGATGTCACAGCGAGATCTCTCTCACATCGGTTTTTCTGAATATTTTTCATCCGTGGTTGGTTGAATCTATGGATGTGGAAACCGGAAACCCTGG
Seq C2 exon
GTTTCACCGGAAGACTTTTGTGAAAAGATGTGGATCAATTATACCTATTTTTGGAACTATGAATGTGATGCACTTTCTGCATATGTGGCTCTGTGCAACAAGTTTGATATCTGTATTCAGTGGAGAACACCTGATTACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-'53-61,'53-60,54-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(9.7=22.2),PF087426=C8=PU(31.0=30.6)
A:
NO
C2:
PF087426=C8=FE(66.2=100)
Main Inclusion Isoform:
ENST00000458043fB21754
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAATGAAGATCCGGATGATGA
R:
TGCACAGAGCCACATATGCAG
Band lengths:
307-601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains