HsaEX1026733 @ hg38
Exon Skipping
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80222091-80229378:+
Coord C1 exon
chr12:80222091-80222245
Coord A exon
chr12:80228908-80229096
Coord C2 exon
chr12:80229257-80229378
Length
189 bp
Sequences
Splice sites
3' ss Seq
GTTTTATGATTCTCTAATAGGTA
3' ss Score
8.36
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
TCCCAAACATGGGCAACGGCAGAGATGGGATTTGTAAAACCTGGGGACAGTATCATTTTGAAACATTCGATGGCATCTACTATTACTTCCCAGGAAACTGTTCTTACATTTTTGCAAAGGACTGTGGTGATTTGGAGCCTCGGTACACTGTATGG
Seq A exon
GTAAAAAATACGGATGACAAATGTGCTTCTTTGTGGCACTCCAGAGTTTTACTATTAGAACTAATTTCTCCCAAAGCATACCATGTACCTTGAGAATATTAACATCCAACATGCGAAGATTCAAATCGTTCAAAAATATGCTGATTAACTTGTATTTTAGGAAGTTAATTTTGTTGCCCAATTTCTGAG
Seq C2 exon
GTTCATAACAGCCCTAAATGCCTTGGTTCGGTGTATTCTTGTTATCGGTCAATCAGCTTGTTCTTTTCAAACCAAGAGGAAATTCGAATTTATGGTCATGAAATAAAAAAGAATGGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(26.7=76.9)
A:
PF0009420=VWD=PD(31.1=61.3)
C2:
PF0009420=VWD=FE(26.7=100)
Main Inclusion Isoform:
ENST00000458043fB21755
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACGGCAGAGATGGGATTT
R:
TCATGACCATAAATTCGAATTTCCT
Band lengths:
244-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains