HsaEX1026735 @ hg38
Exon Skipping
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80211949-80217664:+
Coord C1 exon
chr12:80211949-80211997
Coord A exon
chr12:80214664-80214756
Coord C2 exon
chr12:80217598-80217664
Length
93 bp
Sequences
Splice sites
3' ss Seq
AACCATGTCTCTTTTTTCAGTTC
3' ss Score
9.38
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
AAACGGGTTTAATGAAAATCGACAGAAAAGAGCTCTTTTAGCAGCACAG
Seq A exon
TTCAGTTGGTATTTGTTGATGACATACCAAGGACAGTGAGATATAAACAAGAATAGCAGTGCCTGTTATCTAGAAACTCCATCTGTTACGGAG
Seq C2 exon
TTTGAAGCTACTTCTCCGAGATACTTTTTCCATGATGCTATTAATTGGGGTGAGAGCAAAATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899_MULTIEX1-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000458043fB21757
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGTTTAATGAAAATCGACAGA
R:
CTTTTATTTTGCTCTCACCCCAA
Band lengths:
114-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains