HsaEX1026764 @ hg38
Exon Skipping
Gene
ENSG00000187950 | OVCH1
Description
ovochymase 1 [Source:HGNC Symbol;Acc:HGNC:23080]
Coordinates
chr12:29473029-29475189:-
Coord C1 exon
chr12:29475061-29475189
Coord A exon
chr12:29473219-29473405
Coord C2 exon
chr12:29473029-29473103
Length
187 bp
Sequences
Splice sites
3' ss Seq
CCTTGGCAATATCTTTTCAGGCT
3' ss Score
6.33
5' ss Seq
ATGGTAGTG
5' ss Score
0.33
Exon sequences
Seq C1 exon
CTAAACTTTGTGGAATGTTGACCATCACTTCAATATTCAGTTCTAGTAACATGACGGTGATATACTTTAAAAGTGATGGTAAAAATCGTTTACAAGGCTTCAAGGCCAGATTTACCATTTTGCCCTCAG
Seq A exon
GCTAAACAATGAGATCCTGAAAAAAAGACTGATATTGAAAACAGCCATCAATGTATAAGGAAAACCATGAGATTAATATCAAGAAACCAAGGAAGGAAGAAGTGCTTAAAAGAGCCAGATGGAACAGGGATATTAACGGATATACAAGAAATCACATTTCTGGGATCTGGCATCTAGTGTATGAATG
Seq C2 exon
AGTCTTTAAACAAATTTGAACCAAAGTTACCTCCCCAAAACAATCCTGTATCTACCGTAAAAGCTATTCTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187950_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(33.6=84.1)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000318184fB21770
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTTTGTGGAATGTTGACCATCAC
R:
CATGCAGAATAGCTTTTACGGT
Band lengths:
202-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains