HsaEX1026767 @ hg38
Exon Skipping
Gene
ENSG00000183378 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr11:7691902-7695188:-
Coord C1 exon
chr11:7695058-7695188
Coord A exon
chr11:7692372-7692537
Coord C2 exon
chr11:7691902-7691995
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTACATCTGTGCCTTCTCAGAAT
3' ss Score
8.82
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
ATTCAGGTTGCAGTTACTTAACTGTCCTTTTTGAAGAAGGTCTCATACAGAGTCTAAACTATCCTGAAAACTACAGTGACAAGGCTAACTGTGACTGGATTTTTCAAGCCTCCAAACATCACCTAATTAAG
Seq A exon
AATTTTGCAGTGAGGCATGGAAATATAGTGGCAACAGGACAAAGCAGGTGAGAAGAGGAGCCAGCTATATCCCGCTGGGTAGAAAGACACGGTCTCCAAGGGGCACAACAAATTTCAGTCTTGATTCAGGAGAACTAGAGGTTCAAGATGAAACATCAGGAACCAG
Seq C2 exon
CTTTCATTTCAGAGTCTGGAAATAGAAGAAAGTGGAGACTGCACTTCCGACTATGTGACAGTGCACAGCGATGTAGAAAGGAAGAAGGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183378_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(36.4=90.9)
A:
PF0043115=CUB=PD(14.3=41.2)
C2:
PF0043115=CUB=FE(28.2=100)
Main Inclusion Isoform:
ENST00000533663fB21771
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTAACTGTCCTTTTTGAAGAAGG
R:
TATTTCCTTCTTCCTTTCTACATCGC
Band lengths:
210-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains