HsaEX1027128 @ hg38
Exon Skipping
Gene
ENSG00000135903 | PAX3
Description
paired box 3 [Source:HGNC Symbol;Acc:HGNC:8617]
Coordinates
chr2:222199888-222202190:-
Coord C1 exon
chr2:222201944-222202190
Coord A exon
chr2:222201412-222201442
Coord C2 exon
chr2:222199888-222201240
Length
31 bp
Sequences
Splice sites
3' ss Seq
CTGCGTGTGTTTCCTTACAGGTG
3' ss Score
12.84
5' ss Seq
CGCGTAAGT
5' ss Score
9.93
Exon sequences
Seq C1 exon
GTAATGGGACTCCTGACCAACCACGGTGGGGTACCTCATCAGCCCCAGACTGATTACGCGCTCTCCCCTCTCACCGGGGGTCTGGAACCTACCACCACGGTGTCGGCCAGCTGCAGTCAGAGACTAGACCATATGAAGAGCTTGGACAGTCTGCCAACATCTCAGTCCTACTGTCCACCCACCTATAGCACCACAGGCTACAGTATGGACCCTGTCACAGGCTACCAATATGGGCAGTATGGACAAA
Seq A exon
GTGCCTTTCATTATCTCAAGCCAGATATCGC
Seq C2 exon
TTGGTTTCAAATCCTTTTGAACACGTTCGACAAAAGCAGTGGAGAAGAGGAAGACCTGGAGCAATAAAAGACAAATGCAACATTTTAAGGCAATGGTTTCACATGGTTACATATCAAAACATCCCAATTCTTTAGTGCTGATCATCGAGGAGCTAGAACATTCCATTTGCTTGTGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTATTGAGATTTACCCAGACTGGTTTGGGCAAGCAGACTGTTCTAAAATATAATAGAATACCCTAAAGTATAACATGTCGATGTTCGATGCTGATACTTCTACAACTTTAAAACTGCTCATTTCATGAAGCAAGAATGGAGGAATCCTTGACTCTTACACACTGGAAATTGAAATAAAGATAAATGCAACCATTTTTAGGAAGCTAGACTAGCTGTAAAGGACCTCCTAAATAAATTATTTGTTACTGTATCCTCATTTGTAATCTAGTTGTCAATAAATGGCCCGGACATGTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135903-'23-13,'23-12,24-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=0.816 A=0.490 C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCCACCTATAGCACCAC
R:
TCCACTGCTTTTGTCGAACGT
Band lengths:
117-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains