HsaEX1028103 @ hg38
Exon Skipping
Gene
ENSG00000139144 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr12:18262692-18282759:+
Coord C1 exon
chr12:18262692-18262792
Coord A exon
chr12:18281023-18281187
Coord C2 exon
chr12:18282004-18282759
Length
165 bp
Sequences
Splice sites
3' ss Seq
GTCATTTTTTTGCCCCATAGAAC
3' ss Score
9.25
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AAGCAAGATCCTGTGATGCCATTGTGAACCCCAAGGCTATGATTTCACTTTTTCTTCTGCCTGAGCTGGAATCATTTTGGTCGTGAGGAAGCCCTCTTCAA
Seq A exon
AACACTGGAATAAGAGCAGATTCTTGGGTGAATTATGATTGGTTTTGGACTTTCACTTGGAGACTTAAAAAATATCCAAATGGAGCTATTGATTAAGTAATAAGAAGAGTGGCCAAGGTTAAAGTCATTGACAAATGGATGGGATGGTAATTTAAACCACAGGAG
Seq C2 exon
GAAAATTTCTATCTTCTTTTGTATTATCAAGGAGATATTTGGAGCAGAGTCAACCCTCTCAGTTACATAAAATAAAAAATGGCATATTCTTGGCAAACGGATCCAAATCCTAATGAATCACACGAAAAGCAGTATGAACACCAAGAATTTCTCTTTGTAAATCAACCCCATTCTTCTAGCCAAGTCAGTCTGGGTTTTGATCAGATAGTAGATGAGATCAGTGGCAAAATTCCACACTACGAGAGTGAAATTGATGAAAACACCTTTTTTGTGCCCACTGCACCAAAATGGGACTCAACAGGGCATTCATTAAATGAAGCACACCAAATATCCTTGAATGAATTCACTTCTAAAAGCCGTGAACTCTCCTGGCATCAAGTTAGCAAAGCACCAGCAATTGGTTTTAGTCCTTCTGTGTTACCAAAACCTCAAAATACGAATAAAGAATGCTCCTGGGGAAGCCCCATAGGAAAACATCATGGTGCTGATGATTCCAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139144-'4-3,'4-2,5-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.345
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGCCTGAGCTGGAATCA
R:
ACCCAGACTGACTTGGCTAGA
Band lengths:
243-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains