HsaEX1028106 @ hg38
Exon Skipping
Gene
ENSG00000139144 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr12:18381766-18391252:+
Coord C1 exon
chr12:18381766-18381880
Coord A exon
chr12:18384483-18384651
Coord C2 exon
chr12:18391122-18391252
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATCAAACTATTTCTTGACAGGTC
3' ss Score
8.29
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
AAAATCCATTCTCGGGTCTATGCTGTTCAGCATGACATTACAGAGTGAGCCTCCCGTAGAAATGATAACTCCAGGAGTGTGGGATGTAAGTCAGCCATCCCCGGTGACCCTGCAG
Seq A exon
GTCCAAACCACCTTAGCTTAATGAAAATTTTCAAGTATGACCATTGTCAGAGTTTTGTGGATATAAATTCATGATTTTAAGGTTCTATGGGGCAGAGAAGAGTGATGGTGGTAGAAGAAGGAGAAGAAGGTCTATCAGATGAGACTATCCTTGATTCTTCTCAGATGAG
Seq C2 exon
ATTGATTTTCCAGCTACTGGGTGGGAGTATATGAAACCTGATTCTGAAGAGAATAGAAGTAATCTTGAAGAGCCACTAAAGGAGTGTATAAAACATATTGCCAGACTTTCACAGAAACAGACTCCCCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139144_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.144
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=FE(30.2=100)
A:
PF0079219=PI3K_C2=PD(2.3=42.9)
C2:
PF0079219=PI3K_C2=PD(4.0=11.4),PF0061315=PI3Ka=PU(12.0=50.0)
Main Inclusion Isoform:
ENST00000538779fB22559
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTCTCGGGTCTATGCTGT
R:
AGTAGGGGAGTCTGTTTCTGTGA
Band lengths:
242-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains