HsaEX1028107 @ hg38
Exon Skipping
Gene
ENSG00000139144 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr12:18313962-18321032:+
Coord C1 exon
chr12:18313962-18314064
Coord A exon
chr12:18314526-18314621
Coord C2 exon
chr12:18320962-18321032
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTCCTCTCACTAGGTT
3' ss Score
12.32
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
CGACCACTGTTTGGGGAGCCACAAAATGTTTCAAAAAGATAAATCTGTTATTCAGCTCCACCTGCAGAAAAGTAGGGAAGCTCCAGGAAAGCTATCTCGAAAG
Seq A exon
GTTAGGACACAGCAAGAAGGAAGCTGTCTGCACACAGGAAAAGGGCTCTGACCCTGATTATAAACTTTGCAGCCTATAGAACGAAGAGAAATAAAT
Seq C2 exon
CATGAAGAGGACCACAGTCAGTTTTATCTGAATCAACTTCTAGAATTTATGCATATTTGGAAAGTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139144_MULTIEX2-2/4=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PD(26.5=74.3)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000538779fB22560
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTTTGGGGAGCCACAAA
R:
TTGATTCAGATAAAACTGACTGTGGT
Band lengths:
135-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains