HsaEX1028870 @ hg38
Exon Skipping
Gene
ENSG00000196313 | POM121
Description
POM121 transmembrane nucleoporin [Source:HGNC Symbol;Acc:HGNC:19702]
Coordinates
chr7:72950058-72953430:+
Coord C1 exon
chr7:72950058-72950196
Coord A exon
chr7:72952152-72952295
Coord C2 exon
chr7:72953326-72953430
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTCTCAGTCTCTTGTCCCACCTG
3' ss Score
-2.14
5' ss Seq
AGCCTGGGA
5' ss Score
-12.3
Exon sequences
Seq C1 exon
CCTGTCCTGCAGAATGAGGTGTCCGGCCCGGTACAGTGGGTGTTCATGCAGATCTGTCTGGGCGGGAAACACCAGCAGCTCCGGCATCAAGGGGTCCAGGAGAAAATGCTTCCCCTTGAGGGCTCGTAAGTCATCGAGG
Seq A exon
CTGATGAGATATCCCACAGATGTGGAGGGGCAGGCCACCCCTTCATAATCCCAGCTGCTCAGAAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGCGGTGAGCCGAGATCGCGCCAGGGCACTCCATCCAGC
Seq C2 exon
CTGGAAGCCCGACCCTGATAGGAGAAACCTTGTCTCTTGAAATAACTACATAAACGGAGCAGGTCTTGAGAGTGTTCACACGCACAAATCGAGGCAGCTGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196313_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTGCAGAATGAGGTGTC
R:
CCTCCCAGCTGCCTCGATTT
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains