HsaEX1029166 @ hg38
Exon Skipping
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1 regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr7:94907968-94910332:+
Coord C1 exon
chr7:94907968-94908139
Coord A exon
chr7:94908388-94908594
Coord C2 exon
chr7:94909898-94910332
Length
207 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTAAATGTGGCCAGGGA
3' ss Score
4.57
5' ss Seq
CAAGTTGGT
5' ss Score
2.11
Exon sequences
Seq C1 exon
GCGGCCGCCGCAGCCGCCCTACGCGCTGCGCCGTGAGGAGCGGGTTGCGGTGTACCCAGCGGGCCGGCGCCGAGCCGAGCCGCCGCGTCCACCGTGGGGCGGGGGGCGCCTGCGAGGAGGGGGTGGGAGCCGCGGCGGCCCGACCCTCCCCGCCCGCGGCGCTCCCGCTCGG
Seq A exon
GGAGCTCGTCTCTCTCCGTGTCACAGTGGGATCCGCCTGGCAGCCGCCGGGAGCTGCAGCCAATGTGTTAGGACTTCAGGTGCTTCTTGGCACAAAGCTAGACTGCGACCTCCTACCATAGCGCTTGGCGTCACCTGCTCTCCCGGTCCTGCCCCAGGGCCGAGGGATTGCGTCCCGAACCGGGCTTGGGAATCGGCTGCCTCTCAA
Seq C2 exon
ATGAACCTCTAGTCTTGCTTTGAAAAAATCATTCTGTGTAACTCTTGACTGTGACTAAGTTCCTAATACACCTGTTGGGACGATCACTGACACCGTATACCATTTGAGAGGTACTTTTCTTGACCCAATACTGGTGATTAGAGAAGAGAGGTATCTTGGTTTTTGGTTTTTTTCTTTGATCATTATGAACATTGGCTTTTCACCCCTGAAGTGAAAATGTTGAAAACTGAGTCTTCAGGTGAACGAACCACTCTCAGAAGTGCCTCTCCTCACAGGAATGCATATCGAACTGAGTTTCAGGCACTGAAAAGTACCTTTGACAAACCCAAGTCAGATGGGGAACAAAAAACAAAAGAAGGTGAGGGCTCCCAGCAGAGCAGGGGGAGGAAATATGGCTCCAATGTCAACAGAATTAAAAACCTATTTATGCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528-'2-5,'2-4,3-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.931
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCGGTGTACCCAGC
R:
ACCAAAAACCAAGATACCTCTCT
Band lengths:
297-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains