HsaEX1029305 @ hg38
Exon Skipping
Gene
ENSG00000204478 | PRAMEF20
Description
PRAME family member 20 [Source:HGNC Symbol;Acc:HGNC:25224]
Coordinates
chr1:13414132-13418700:+
Coord C1 exon
chr1:13414132-13414232
Coord A exon
chr1:13416351-13416630
Coord C2 exon
chr1:13418122-13418700
Length
280 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTTTGCAGATTCAGGAA
3' ss Score
2.26
5' ss Seq
AGGGTTCGT
5' ss Score
3.88
Exon sequences
Seq C1 exon
CTCTGGTTCAGGCGATTCTCCTGACTCAGCCTCTCAAGTAGCTGGGACTACAGGCACCCGCCATCACACCTGACTAATTTTTTTTTTTTTTTTTTTTTTTT
Seq A exon
GAAGATGAGCATCCGGACTCCACCCAGACTCCTGGAGCTGGCGGGGCGGAGCCTGCTGAGGGACGAGGCCTTGGCCATCTCCACCCTGGAGGAGCTGCCCACGGAACTTTTTCCCCCATTGTTCATGGAGGCCTTCAGCAGGAGACACTGTGAGGCCCTGAAGCTGATGGTGCAGGCCTGGCCTTTCCTCCGCCTTCCTCTGGGGTCTCTGATGAAAAGGCCTTGCCCAGAGACCTTCCAAGCTGTGCTCGATGGGCTTGATGCACTGCTTACCCACAGG
Seq C2 exon
GAGGTGGAAACTTCAAGTGCTGGATTTACAGGATGTCAGTGAGAACTTCTGGATGGTTTGGTCTGAAGCCATGGCCCGTAGGTGCTTACCAAATGCCATGATGAACAGAAAACCACTGCAGGACTGTCCAAGGATGAGAGGACAGCAGCCCTTGACTGTGTTCATAGACCTTTGCCTCAAGAACAGGACTCTGGATGAATACTTCACCTGCCTCTTTCTATGGGTCAAGCAGAGGGAAGGTTTAGTACACCTGTGCTGTAAGAAGCTGAAAATGTTGGGAATGCTCTTCCACAATATCAGAAACATCCTGAAAACAGTCAACCTAGACTGTATCCAGGAGGTGGAAGTGAATTGCAATTGGACACTGCCCGTCCTGGCAGAGTTTACCCCATACCTCGGCCAGATGAGGAATCTTCGGAAGCTCGTTCTCTCTGACATAGATTCTCGCTACATTTCCCCAGAGCAGAAGAAGGAGTTTGTTACCCAGTTCACCACTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204478-'2-1,'2-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTTCAGGCGATTCTCCT
R:
CCAGAGTCCTGTTCTTGAGGC
Band lengths:
294-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains