HsaEX1029712 @ hg38
Exon Skipping
Gene
ENSG00000178055 | PRSS42
Description
protease, serine 42 [Source:HGNC Symbol;Acc:HGNC:30716]
Coordinates
chr3:46832992-46833823:-
Coord C1 exon
chr3:46833711-46833823
Coord A exon
chr3:46833392-46833519
Coord C2 exon
chr3:46832992-46833206
Length
128 bp
Sequences
Splice sites
3' ss Seq
GCAGGCCACTGCATTTCCAGGTG
3' ss Score
5.09
5' ss Seq
TAGGCATGT
5' ss Score
0.01
Exon sequences
Seq C1 exon
CCTGCGGTCCGCGGCCCGGGGAATCTGAAGCGTGGCTCGGGAGCCCCGGGGGACATGGCCTCCTTCTTGGCTGTCGTCGGGGCGCCCGGGGGAGTCAACTCCTGTGTCTTTGA
Seq A exon
GTGAGGAGCGGCACGCGGGGCTGGGGGCCGGCCCCCTCAAGCACACACAGTTCCATTGCCCCGGCAATTTGGCGACAAAGAAACAAAACTCACAGTGAAGCCGGAGTGCATCGGTCGTCTTGCTGTAG
Seq C2 exon
CCGTTTCCATTACAGTGTCAAGATGGGAGATCGGAGTGTCTATAATGAAAACACAAGTGTGGTGGTCTCAGTCCAAAGAGCTTTTGTCCACCCTAAGTTCTCAACAGTTACAACCATTCGAAATGACCTTGCCCTTCTCCAGCTCCAACATCCTGTGAATTTTACCTCAAACATCCAGCCTATCTGCATCCCTCAGGAGAATTTCCAGGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178055-'1-3,'1-2,3-3
Average complexity
S
Mappability confidence:
100%=67=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(7.3=30.0)
A:
NO
C2:
PF0008921=Trypsin=FE(87.8=100)
Main Inclusion Isoform:
ENST00000447340fB23543
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATCTGAAGCGTGGCTC
R:
TCACAGGATGTTGGAGCTGGA
Band lengths:
253-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains