HsaEX1029720 @ hg38
Exon Skipping
Gene
ENSG00000253649 | PRSS51
Description
protease, serine 51 [Source:HGNC Symbol;Acc:HGNC:37321]
Coordinates
chr8:10498616-10547585:-
Coord C1 exon
chr8:10547430-10547585
Coord A exon
chr8:10500338-10500388
Coord C2 exon
chr8:10498616-10498808
Length
51 bp
Sequences
Splice sites
3' ss Seq
TGCGCCCCAACCCCCTACAGGCC
3' ss Score
8.02
5' ss Seq
CCTGTAAGA
5' ss Score
4.07
Exon sequences
Seq C1 exon
CGGAGCAGCAGAGCACCGGGAGGCCCAGGGATGTGGCGAGGCAGCCGCGGTGTCAGAAAGAGGAAGGCAGGAGGCTGAGGCCGAGGGCCCTGGAATCTCGCACATTCCAGGGTTCAGAAAGATCACGGTGGGGTCCACCTCTGGAGTCCACAAAAG
Seq A exon
GCCTTCTTTGGATCCCTGTAAACTGGGTTGGCAGTAATGCAGCTGGACCCT
Seq C2 exon
AAAACGTACAATGTGGCCACAGGCCTGCTTTTCCAAACTCGTCATGGTTACCATTTCATGAACGGCTTCAAGTCCAGAATGGTGAGTGCCCGTGGCAAGTGAGTATCCAGATGTCACGGAAACACCTCTGTGGAGGCTCAATCTTACATTGGTGGTGGGTTCTGACAGCCGCACACTGCTTCCGAAGAACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000253649_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.046
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0008921=Trypsin=PU(53.7=67.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGTCAGAAAGAGGAAGGC
R:
CCTGTGGCCACATTGTACGTT
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains