HsaEX1029901 @ hg38
Exon Skipping
Gene
ENSG00000107317 | PTGDS
Description
prostaglandin D2 synthase [Source:HGNC Symbol;Acc:HGNC:9592]
Coordinates
chr9:136975395-136976981:+
Coord C1 exon
chr9:136975395-136975476
Coord A exon
chr9:136975673-136975902
Coord C2 exon
chr9:136976549-136976981
Length
230 bp
Sequences
Splice sites
3' ss Seq
TCAGAGTCCCTCCCTGGCAGGTG
3' ss Score
6.74
5' ss Seq
GAGGCCAGT
5' ss Score
-0.05
Exon sequences
Seq C1 exon
GGACTGAGGAGTCCGTCCTGAACCGAAGCATGATCCTGTTAGCTCTTCCAGCTCTCCAGGCGCCAACGACCATATGGTCTCG
Seq A exon
GTGACCCAGGCCTGCCCAGACGGAAGCCATTCAGACCCAGAGCCACGTGTCCTGGGTCTCCCTGCCCCGGGCCACCCGCCACCACACCCCAGAGCTTGCTCACCACCGGGAGGCGCTCTTGTCCTGGACCAGCCTAGCCTGGGTTGGGACCTCCAGCCAGGCCAGTCAGCGAGCCACCAGCCCCACCAGAGTGGAATGACAGCCAGGACTCAGCTGGCAGCGGGCAGGAG
Seq C2 exon
CTCCCCACCCGGGCTCACCTTCAGACCAGCGGCAGCGCTCACCCACCACGCCTGCCAGGGAAGCTCAGTCCCAACAGAATCCAGAGAGGGCCCACCACATGTGCCTGCCTGTGACGGCCTGTGACAGGGCCCCAGCCAGGGCCAACGAGCTGGAGGGGCCCAAGGAGCTGGGTGCAGCGCTGGGGTAACAGGACAGCCCCACGGGGTGCTCCCGAGTCTGGACCAGACTCGGGGTGGGGAGGCCCAGACTCGGCGGGGGGCAGACTTGGGGTGGGGGGATTGCTGGGGGAAGTTGGGGCCTCTGGCAAGGGATAGGGCCTGTGCTCAAGCCCAAAGGTGCCCCAGGCTGAAATGGGCACCCAGGGGTCACTATCAGAGCCCCAACAGCTGGCCATGGGGGAAGCCATGCCCAGCAAACCTGGCCCTCGGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107317_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTGAACCGAAGCATGAT
R:
CACCCCGAGTCTGGTCCAG
Band lengths:
305-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains