HsaEX1030269 @ hg38
Exon Skipping
Gene
ENSG00000119943 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr10:98392942-98395452:-
Coord C1 exon
chr10:98395391-98395452
Coord A exon
chr10:98394972-98395143
Coord C2 exon
chr10:98392942-98393083
Length
172 bp
Sequences
Splice sites
3' ss Seq
TGGGGCATGTTCCCCAACAGGAG
3' ss Score
6.95
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCCGCATCCTGGGAGCCCAGCTTCCCCGATATTATGAGGTCCTCACAGCTCCCATTACCAAG
Seq A exon
GAGTGAGGACAACAGTGGCAGTGGCAGCAACAACAGCTGCCACTTAACAGAGCTCACCCAGTGAGCCAGGAACCGAGCCAGGCACATCACACACGATCCACTTAACCCTCAGAGCAACATCTGAGAACTGCGGTTCAGAGAAGGGAGTGTCTTGCCCAAAGCCACTCAGCTG
Seq C2 exon
GTATGTGCTGCTGCACCATGTGATGGGGGGCCTGGAGGGAATGCAGGGGGCCTGGGGCTACGTCCAGGGGGGCATGGGTGCCCTCTCTGATGCGATCGCAAGCTCAGCCACCACACATGGAGCAAGCATCTTCACTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119943_MULTIEX1-2/10=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAGCTTCCCCGATATTA
R:
TCAGTGAAGATGCTTGCTCCA
Band lengths:
187-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains