HsaEX1030295 @ hg38
Exon Skipping
Gene
ENSG00000165661 | QSOX2
Description
quiescin sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr9:136211264-136215304:-
Coord C1 exon
chr9:136215154-136215304
Coord A exon
chr9:136214054-136214135
Coord C2 exon
chr9:136211264-136211452
Length
82 bp
Sequences
Splice sites
3' ss Seq
GTTGTGTGTGTGCTTCCCAGTTG
3' ss Score
7.48
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
Exon sequences
Seq C1 exon
ATTTCTGGAATATTCCTTACTAATCACATAAAGTGGGTTGGATGTCAAGGAAGCCGATCTGAGTTGAGGGGTTACCCGTGTTCTCTCTGGAAACTGTTCCACACTTTGACTGTTGAAGCCTCGACCCACCCAGATGCACTGGTTGGCACAG
Seq A exon
TTGAAGCAGTAATTCAGGTTCATTAATGTTTACTTCAAAGCCGAAGTGGAGTCTTGACTCACACAGTTCAACGCTCTTTCCA
Seq C2 exon
GCTTTGAAGACGACCCCCAGGCTGTGCTGCAGACAATGAGGAGGTACGTTCACACCTTCTTTGGGTGTAAGGAATGTGGTGAGCACTTTGAGGAAATGGCTAAAGAATCCATGGACTCGGTGAAAACCCCAGACCAAGCCATCCTCTGGCTGTGGAAGAAGCATAATATGGTGAACGGCCGCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.078
Domain overlap (PFAM):
C1:
PF047778=Evr1_Alr=PU(23.3=47.1)
A:
NO
C2:
PF047778=Evr1_Alr=FE(61.2=100)
Main Inclusion Isoform:
ENST00000358701fB23876
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACTGTTGAAGCCTCGACC
R:
GGGTTTTCACCGAGTCCATGG
Band lengths:
175-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains