HsaEX1030459 @ hg38
Exon Skipping
Gene
ENSG00000161800 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chr12:49976923-49978359:-
Coord C1 exon
chr12:49978259-49978359
Coord A exon
chr12:49977315-49977352
Coord C2 exon
chr12:49976923-49977059
Length
38 bp
Sequences
Splice sites
3' ss Seq
GGTTCGCCTCTTCATTCCAGGGC
3' ss Score
6.86
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
ACATACAGACACCCAGCTCTCCCTGCTCATAAAAGGACACAGGCAGCCTTGGACTCTGAGAGATTGTGAAGATGGATGAGTGGGGCCCAGCTTGGAGAGAT
Seq A exon
GGCCCTCCCACAGCCCCTCACACCCACAAAGCCTCAAG
Seq C2 exon
CAGTCCCTGGAGGAGGATTGTGTGTCCATTTTACAGCTGGAGAAGCCGAGATCCAGAAAGGACCCCCAAGTTGTGGGCAGAATAAATCTACAGCAGCTTTTAACTATTAAACCAACTTAGATTTTGGTAGTCTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161800-'65-71,'65-70,66-71
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.293
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000548961fB23998
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACAGACACCCAGCTCTCCC
R:
CACAATCCTCCTCCAGGGACT
Band lengths:
121-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains