HsaEX1030693 @ hg38
Exon Skipping
Gene
ENSG00000170667 | RASA4B
Description
RAS p21 protein activator 4B [Source:HGNC Symbol;Acc:HGNC:35202]
Coordinates
chr7:102485039-102488598:-
Coord C1 exon
chr7:102488220-102488598
Coord A exon
chr7:102487786-102487845
Coord C2 exon
chr7:102485039-102485159
Length
60 bp
Sequences
Splice sites
3' ss Seq
CTGCAATCTCCGTTTCCCAGGCT
3' ss Score
5.9
5' ss Seq
CCAGCTAAG
5' ss Score
-19.98
Exon sequences
Seq C1 exon
TGTGTGAATGAGCTTAACCAGTGGCTGTCTGCGCTGCGGAAGGTGAGCATCAACAACACCGGACTGCTGGGCTCCTACCACCCTGGCGTCTTCCGTGGGGACAAGTGGAGCTGCTGCCACCAAAAAGAGAAGACAGGTGGGAGAGGAGGCCTGGGTCCCGGGCTCTGCATCCGTCCACTGCGAGATCGGGCCTCTGGCTGAACGATGGGACCCTGAGCCCTGCTGTGCACCTGCAGGGACCTAACCCAAGGAATGCTGGCCCCTCCAGGAGCTCTGGGCAGAAAGGGTCCCGTGGACCAGGTGGTTTGGGAAATGCCACGTGATGTGTGTGATGCATATGAGTGAATTCGCTGAAGGCTCTAAGGAGGCCCGAAAACAC
Seq A exon
GCTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTACTACAGGCGCAAGCCACTGCACCCA
Seq C2 exon
GTCAGGGCTGCGATAAGACCCGGTCACGGGTGACCCTGCAGGAGTGGAATGACCCTCTTGACCATGACCTTGAGGCCCAGCTCATCTACCGGCACCTGCTGGGCGTGGAGGCCATGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170667-'20-23,'20-22,21-23
Average complexity
S
Mappability confidence:
57%=50=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.952 C2=0.262
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.2=32.6),PF0077914=BTK=PU(68.8=47.8)
A:
PF0077914=BTK=PD(4.2=4.8)
C2:
PF0077914=BTK=PD(28.1=22.0)
Main Inclusion Isoform:
ENST00000306682fB24149
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGAAATGCCACGTGATGT
R:
AGGTCATGGTCAAGAGGGTCA
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains