HsaEX1030695 @ hg38
Exon Skipping
Gene
ENSG00000111344 | RASAL1
Description
RAS protein activator like 1 [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr12:113101889-113104081:-
Coord C1 exon
chr12:113103946-113104081
Coord A exon
chr12:113102936-113103091
Coord C2 exon
chr12:113101889-113102009
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATGTAATACAATGTTATAAGTGC
3' ss Score
-0.95
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
AATGTGAATGAGCTCAACCAGTGGCTCTCGGCCTTGCGCAAGGCCAGCGCCCCCAACCCGAACAAGCTGGCCGCCTGCCACCCCGGTGCCTTCCGCAGCGCGCGCTGGACCTGCTGCCTCCAGGCTGAGCGCTCAG
Seq A exon
TGCCAAGATGAGACGTTTGAGATTCCAGTGGATGCCTCTGACCCAGCCTCAGGATGGGGACTCAAGGAGGGCTTCCTGGAGGAGGTGCTGCTTAAATGTGACCTGAGTAGAGCAGAAGTTAAGCAGCGGCATTGGAGACAGAACTGGGAGATGGGG
Seq C2 exon
CCGCCGGCTGCAGCCGTACACACTCAGCTGTCACCCTGGGGGACTGGAGTGACCCACTGGATCCTGATGCTGAGGCCCAGACAGTGTATCGGCAGCTGCTCCTGGGGCGGGACCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111344_MULTIEX2-3/4=2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.140
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(15.0=34.8),PF0077914=BTK=PU(68.8=47.8)
A:
PF0077914=BTK=PD(4.2=25.0)
C2:
PF0077914=BTK=PD(28.1=22.0)
Main Inclusion Isoform:
ENST00000261729fB24150
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGAGCTCAACCAGTGGC
R:
AGGAGCAGCTGCCGATACA
Band lengths:
235-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains