HsaEX1030887 @ hg38
Exon Skipping
Gene
ENSG00000153250 | RBMS1
Description
RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]
Coordinates
chr2:160318169-160331878:-
Coord C1 exon
chr2:160331778-160331878
Coord A exon
chr2:160329680-160329849
Coord C2 exon
chr2:160318169-160318227
Length
170 bp
Sequences
Splice sites
3' ss Seq
TTTTGCCATCCTATCAACAGCTC
3' ss Score
9.39
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CCTCCCTGACCCAGGCTAGTTCTGCTAGAAAACTTCTAGTGACTGCAAACACTCGACTCCAGTTCTTGGAAAGGCCTGCTTTATAGTCTTTCCTTTTCTAG
Seq A exon
CTCTCCTATTATGCAAGGTTTCTCAAAACAAGATTGGTAAATGCTTACTGACAATCATATAGATAAGAAGCACTTTTAGCCCTGATCTCCATACCCAGACCCTACACTTGCCAACTACAAGCAGAAGAACATCATTATCTGGAAAACAGTGGATTCAAGCTCTATTGAGG
Seq C2 exon
ATATGGGAAAATAGTCTCCACAAAGGCAATTTTGGATAAGACAACGAACAAATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153250-'27-29,'27-28,28-29
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0007617=RRM_1=FE(29.9=100)
Main Inclusion Isoform:
ENST00000348849fB24291
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCCAGGCTAGTTCTGCT
R:
TTTGCATTTGTTCGTTGTCTTATCCA
Band lengths:
154-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains