HsaEX1030901 @ hg38
Exon Skipping
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr3:28865224-29183129:+
Coord C1 exon
chr3:28865224-28865292
Coord A exon
chr3:28944825-28944945
Coord C2 exon
chr3:29182956-29183129
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTCACGATTGAGGTT
3' ss Score
-1.92
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
AGAACTTCAGCCAACAAGTCTTCAGGTGCTCCTTCCTATAGCAGATGGTCCAGTTCACAGCCACATCAG
Seq A exon
GTTTTGGATTCTTGGTGGAAAGATCACAGAGGAAAAATGCATTCTCATCACATCATACCAAGAGTATATGCTCTCAACGTGACTTTTCTCTGATGATGTTAAATTCAATCACCTGCCTGAG
Seq C2 exon
TCTAGCTCCACAGTGAGAGCCTATCAAACTAGTAAGTCACGAGTGACCATGAGCCCTGGCTTCAGCTCCCAGTGGAACAGCAGCCAACCAGCCTGGAATACATACTCCTTTCCAAGAGCCAGCCTGCACTACCAGTCCCATGCCAGCTATACCTACTGTACTGGACACCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642_MULTIEX4-2/7=C1-C2
Average complexity
C2
Mappability confidence:
92%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.832 A=0.194 C2=0.411
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000636680fB24298
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTTCAGCCAACAAGTCTTCA
R:
AGCAGGGTGTCCAGTACAGTA
Band lengths:
243-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains