HsaEX1032294 @ hg38
Exon Skipping
Gene
ENSG00000227373 | RP11-160H22.5
Description
NA
Coordinates
chr1:174115300-174155697:-
Coord C1 exon
chr1:174155627-174155697
Coord A exon
chr1:174122084-174122192
Coord C2 exon
chr1:174115300-174115649
Length
109 bp
Sequences
Splice sites
3' ss Seq
GAATTTGTTTTGTTTTTTAGAAA
3' ss Score
9.09
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GAAGATTTGGAAAAGAGGCACTGGCTACTGGAGGAAGGGAGAAATCACCGAGAGAGCGAAAGATGTAACAG
Seq A exon
AAACAGGCTCTTGTTCTGTCACCCATACTTGGAGTGCAGTGGTACAATGATAGCTCACTGCAGCCTCAAACTCCTGGTCTCAAGCAATCCTCTCACCTCAGCCTCCCAG
Seq C2 exon
ATGCAGTGACTCATGCCTATAATCCCAGTACTTTGGAAGGTCAAGGCACAAGGATCCATTGAGGCCAGGAGTCCAAGACCAGCCTGCACAATGTAGCAAGACTCCTTCTCTACAAAAAAATAAATAAAAATTAGCCAGGCATGGTGGTGCACTCCTGTAGTCCCAGCTACTCAAGAGGCTGATGTAGAGAATCGCATTATCCCAGAGGTCAAGGCTGCAGTGAGCCGTGATCATGCCTCTGCACTCCAGCCTGGACGATAGAGCAAGACTTTATCTCAAAAAACAAAAATTTAAAAAGATATCAGGTAGCTCATAGAATTGTTGAGAGGGCTGTAAAACCAGGCTTGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227373_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGGCACTGGCTACTGGA
R:
TCAGCCTCTTGAGTAGCTGGG
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains